PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g050750.1.1
Common NameLOC101260337
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 162aa    MW: 17949 Da    PI: 5.3838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g050750.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-193786255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr++  +g+WvAeIr+p  ng  +r++lg+f t  eAa+a++ a+++l+g
  Solyc04g050750.1.1 37 TYRGVRQRT-WGKWVAEIREP--NG-GARIWLGTFNTSVEAARAYDDAARRLYG 86
                        69****999.**********9..33.5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.02E-193696No hitNo description
PfamPF008479.1E-143786IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-213794IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-303795IPR001471AP2/ERF domain
PROSITE profilePS5103221.5493794IPR001471AP2/ERF domain
SMARTSM003803.8E-3537100IPR001471AP2/ERF domain
PRINTSPR003671.3E-103849IPR001471AP2/ERF domain
PRINTSPR003671.3E-106076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEECGKSRIE SVESKRKSRS RKGCMRGKGG PENASCTYRG VRQRTWGKWV AEIREPNGGA  60
RIWLGTFNTS VEAARAYDDA ARRLYGSDAK LNLSEQESTD VGIIEDGDGE CSVLEEASIF  120
KDGNGKYLVW DTPAPSLLGV DFHGDATTCF NWKNQTEMMY F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-163893359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-163893662ATERF1
3gcc_A1e-163893662ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g050750.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9157400.0S.lycopersicum DNA sequence from clone LE_HBa-103J9, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237644.11e-117dehydration-responsive element-binding protein 2G-like
TrEMBLA0A3Q7GW631e-116A0A3Q7GW63_SOLLC; Uncharacterized protein
STRINGSolyc04g050750.1.11e-117(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-26ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]