PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g056550.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20838.7 Da    PI: 5.1435
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g056550.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.5e-161663249
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        +ienk    +tfskRr+g++KKA+E+ + Cd+++ ++++s++gk + +
  Solyc04g056550.1.1 16 KIENKNALLTTFSKRRKGLFKKASEVVTECDVDIGIMMISPSGKPHSF 63
                        79*****************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-24766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.619767IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-22877IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-11929IPR002100Transcription factor, MADS-box
PfamPF003192.3E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-112944IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-114465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MERKKTKGRQ KIPMQKIENK NALLTTFSKR RKGLFKKASE VVTECDVDIG IMMISPSGKP  60
HSFFHPTADA IVSRFQNPDM QLSEGIRLDA TTARNRVNQL KTRLEELDAI EDALFAQTIF  120
YDQMAETQQK SSWESIEQLD ADELIINEAW LRDTNFKICD RLSQLEIGAS SSLGCEFLEY  180
EV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g056550.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9905590.0S.lycopersicum DNA sequence from clone LE_HBa-78E4 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237586.31e-134agamous-like MADS-box protein AGL29
TrEMBLM1DVS11e-102M1DVS1_SOLTU; Uncharacterized protein
STRINGSolyc04g056550.1.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.15e-23AGAMOUS-like 57
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]