PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g064830.2.1
Common NameLOC101264418
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 256aa    MW: 28846.2 Da    PI: 9.7467
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g064830.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-1414102198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         ffkv+     + s  l++p  f+ + +g++ e+ t++   +    W+v++  +++ ++ + + kGW+eFv+ ++L++gDf vF++ g+++f
  Solyc04g064830.2.1  14 FFKVM--VPGFHS-KLTIPPAFFPKLKGDNLEKGTII---KGKDIWNVEI--NRSEKGiISFDKGWEEFVQNHDLRVGDFAVFEHLGDMRF 96 
                         77888..445555.59*******99977766655666...56789*****..888888899*************************99999 PP

                         ..EEEEE- CS
                  B3  91 elvvkvfr 98 
                            v++++
  Solyc04g064830.2.1  97 --SVTLLD 102
                         ..777666 PP
2B352.31.1e-161682431489
                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           + +p +f++++ +   +++t+tl+ +sg+s  v l++++++++    +t+GW +F ++n+Lk+gD+++F+ld++++
  Solyc04g064830.2.1 168 PYMHIPTEFCQSNALF--QNTTMTLTGPSGKSCPVSLRICNGGKTlyACITRGWHDFFSSNKLKVGDVCLFQLDRSKS 243
                         4589*********877..6679***************9999988888889***********************98743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.87111104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-1712106IPR015300DNA-binding pseudobarrel domain
CDDcd100178.51E-1512102No hitNo description
SuperFamilySSF1019363.53E-1613108IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-1114104IPR003340B3 DNA binding domain
PfamPF023622.1E-1114100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18152242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-17153241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-15154243No hitNo description
SMARTSM010191.3E-6154247IPR003340B3 DNA binding domain
PROSITE profilePS5086310.856155255IPR003340B3 DNA binding domain
PfamPF023623.2E-14169243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MQSSSPELPI SRRFFKVMVP GFHSKLTIPP AFFPKLKGDN LEKGTIIKGK DIWNVEINRS  60
EKGIISFDKG WEEFVQNHDL RVGDFAVFEH LGDMRFSVTL LDSTGCDKKL LEKSEVVPSQ  120
EKKKKVKSAQ PGIEKRKVEG DQPHYQCMKG SSEFTARIKE YNVRKRSPYM HIPTEFCQSN  180
ALFQNTTMTL TGPSGKSCPV SLRICNGGKT LYACITRGWH DFFSSNKLKV GDVCLFQLDR  240
SKSDSNSIAI DVRVL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.126840.0flower| fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g064830.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120670.0S.lycopersicum DNA sequence from clone LE_HBa-132O11 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237741.10.0B3 domain-containing protein REM9-like
TrEMBLA0A3Q7G7460.0A0A3Q7G746_SOLLC; Uncharacterized protein
STRINGSolyc04g064830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Representative plantOGRP2682231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.17e-25B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]