PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g072070.2.1
Common NameLOC101258252
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 229aa    MW: 26462.8 Da    PI: 7.3584
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g072070.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY833.1e-26146204159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYG+K+vk + + r+YY+C+s +C+vkkkver+ +d +++ +tY g+Hnhe
  Solyc04g072070.2.1 146 LDDGYKWRKYGKKKVKTNINLRNYYKCSSGDCKVKKKVERDGSDSRYLMTTYVGKHNHE 204
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-27132206IPR003657WRKY domain
SuperFamilySSF1182904.32E-24139206IPR003657WRKY domain
PROSITE profilePS5081127.198141206IPR003657WRKY domain
SMARTSM007741.4E-27146205IPR003657WRKY domain
PfamPF031069.6E-20147204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MFGSSTSQET TNVISHQHYQ TINPNFYAFH DPLINMNQDH VHNNNYNKYQ DYDTSFLDLF  60
VDGDQEYYSN YTNNNASIYL ENPFKQQEIS SSTYSTSGNS SSASSFDATP THVHMNNENT  120
SIGIEKEKKG EKHAIAFRTK TQLETLDDGY KWRKYGKKKV KTNINLRNYY KCSSGDCKVK  180
KKVERDGSDS RYLMTTYVGK HNHESPFIIY WNEKNQANNF LNESSSSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-20130206177Probable WRKY transcription factor 4
2lex_A1e-20130206177Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.143680.0callus| flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g072070.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682560.0S.lycopersicum DNA sequence from clone LE_HBa-66O12 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237841.11e-170probable WRKY transcription factor 51
TrEMBLM1D2T01e-124M1D2T0_SOLTU; Uncharacterized protein
STRINGSolyc04g072070.2.11e-169(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134941217
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-23WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]