PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g076240.1.1
Common NameLOC101246134
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 206aa    MW: 22782.3 Da    PI: 10.5977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g076240.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.6e-113783354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        ++h  +Er+RR+riNs +++L++l P++     +K +K  +L++Av  +k+L
  Solyc04g076240.1.1 37 VTHAVAERKRRERINSHLHTLKKLFPHL-----PKKDKPRVLTEAVTQLKEL 83
                        68*************************8.....6999999***999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.19E-122591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.4333483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-83783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-73788No hitNo description
Gene3DG3DSA:4.10.280.107.2E-113891IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-74089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.5E-4122186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MLSSLQGCNN VFLQLVDHQK NEKSNTTKKS KSKDAAVTHA VAERKRRERI NSHLHTLKKL  60
FPHLPKKDKP RVLTEAVTQL KELRKNVAQQ LELSSLFIPS ENDVVIINYC DNINDERTVK  120
TTICCEDRPS LNRDLSSAIQ SVQGRVIKAE MATVGGRTKA ELVVVLGKAN GGEKDVGQLK  180
RALKAVVENR ALGFGSNVML GRRFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g076240.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4686380.0S.lycopersicum DNA sequence from clone LE_HBa-272I8 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238538.11e-149putative transcription factor bHLH107
TrEMBLM1AJM01e-139M1AJM0_SOLTU; Uncharacterized protein
STRINGSolyc04g076240.1.11e-149(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137131315
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.14e-32bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]