PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g077990.2.1

Common Name

LOC101261022

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 205aa MW: 22271.3 Da PI: 5.2866

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g077990.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.6	5.5e-30	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlrr+C+++C+l+ ++ p++q +++ +v k+FG+s +++l++a+p+++r+++++sl++eA+ r+ +Pv Gavg++++++++ Solyc04g077990.2.1 2 SCNGCRVLRRRCSDNCTLRTCLdgiddPQAQGNATLFVSKFFGRSDLMSLIAAVPQNRRPALFKSLLFEACGRTVNPVTGAVGLLSTGNWH 92 6**************************************************************************************** PP DUF260 87 leqlkaelallk 98 ++q++++++l++ Solyc04g077990.2.1 93 VCQKAVQTVLAG 104 ***9998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.852	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSCNGCRVLR RRCSDNCTLR TCLDGIDDPQ AQGNATLFVS KFFGRSDLMS LIAAVPQNRR 60 PALFKSLLFE ACGRTVNPVT GAVGLLSTGN WHVCQKAVQT VLAGGNLRPV LAGILTPPYF 120 DNSFRCGGAW DMPNQFCNKS DSMFIDGSEQ IEGMEWISSE KRWNTSSCFG SETELSDVSL 180 GLDSGYGYAE CVKGEEPKLL NLFV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g077990.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238097.2	1e-150	LOB domain-containing protein 38-like
Swissprot	Q9SN23	3e-51	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A3Q7G6A5	1e-149	A0A3Q7G6A5_SOLLC; Uncharacterized protein
STRING	Solyc04g077990.2.1	1e-150	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-53	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Solyc04g077990.2.1
Entrez Gene	101261022

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]