PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g078670.2.1

Common Name

LOC101249353

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 273aa MW: 30073.1 Da PI: 6.7094

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g078670.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84.5	2.2e-26	9	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyW 83 lppG +F P+d++l+++yL k ++ ++ i+e+d+y+++P +Lp ++ ++++w+ F+ r k +r + gyW Solyc04g078670.2.1 9 LPPGTQFYPSDQQLISYYLSSKNGVDHrnGVGFDLIREIDLYNFDPFNLPDsacfRYGRggRKRHWFCFVARVLKG-----GRRRAGGGYW 94 79****************996555532445688**********944666333422444666666665543.....2445689* PP NAM 84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ g+ ++v+ + ++ +vg++k++ fy g+ +ktdW+m ey+l Solyc04g078670.2.1 95 KKRGRVRDVVGAgaGKIVVGTRKSFEFYLGDC---TKTDWLMYEYAL 138 ********99767778******7655...56******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-32	6	154	IPR003441	NAC domain
PROSITE profile	PS51005	36.575	9	154	IPR003441	NAC domain
Pfam	PF02365	1.0E-17	10	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MGDTTSFSLP PGTQFYPSDQ QLISYYLSSK NGVDHRNGVG FDLIREIDLY NFDPFNLPDS 60 ACFRYGRGGR KRHWFCFVAR VLKGGRRRAG GGYWKKRGRV RDVVGAGAGK IVVGTRKSFE 120 FYLGDCTKTD WLMYEYALTG HPMASFVLCR VFIKSHHGNN LSGHVFSSNG EEIVATVRHI 180 GIQFDGSAAL VTGSKMHDEN MIDQENDVSK LPSGLVPDLN GQVVAENVAK QICLESNGPP 240 ILNDYSAQEL IAILEGDFIE LDDLLCPLPG IN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-23	5	160	16	174	NAC domain-containing protein 19
3swm_B	4e-23	5	160	16	174	NAC domain-containing protein 19
3swm_C	4e-23	5	160	16	174	NAC domain-containing protein 19
3swm_D	4e-23	5	160	16	174	NAC domain-containing protein 19
3swp_A	4e-23	5	160	16	174	NAC domain-containing protein 19
3swp_B	4e-23	5	160	16	174	NAC domain-containing protein 19
3swp_C	4e-23	5	160	16	174	NAC domain-containing protein 19
3swp_D	4e-23	5	160	16	174	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	91	GGRRRAGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g078670.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238138.1	0.0	NAC domain-containing protein 19-like
TrEMBL	A0A3Q7G900	0.0	A0A3Q7G900_SOLLC; Uncharacterized protein
STRING	Solyc04g078670.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13528	13	14
Representative plant	OGRP11504	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52890.1	6e-20	NAC domain containing protein 19

Link Out ? help Back to Top
Phytozome	Solyc04g078670.2.1
Entrez Gene	101249353

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]