PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g005360.1.1

Common Name

LOC101246137

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YB

Protein Properties

Length: 225aa MW: 24777.3 Da PI: 4.2731

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g005360.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	98.3	6.4e-31	54	137	2	87
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 +eqd+++P nv+rim+ + P++ kis+dak t+ +c+sefi fvt ea+ +cqre+r+ti+ +d+ w + ++Gf+dy+epl y+ Solyc05g005360.1.1 54 QEQDQVIP--NVARIMQSTHPSHVKISDDAKRTMYHCMSEFICFVTYEANAHCQREQRNTITVEDVDWVINKFGFDDYIEPLPYYF 137 57788776..************************************************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.7E-27	54	136	IPR009072	Histone-fold
SuperFamily	SSF47113	9.78E-23	61	138	IPR009072	Histone-fold
Pfam	PF00808	1.8E-17	62	121	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MDNGNHVGGS GNGGFHSYGR SPQPTPADPP SPDTEMSLEL PAHLNQEVVE IISQEQDQVI 60 PNVARIMQST HPSHVKISDD AKRTMYHCMS EFICFVTYEA NAHCQREQRN TITVEDVDWV 120 INKFGFDDYI EPLPYYFPPN SEDDGGACGS LMRESLLKRP MVDTASSSNI TPYNVPPNFP 180 MAHHHFVYPP PMGNGDMQGE ASTSQCAGAS VDTDVESPME EDKE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	8e-31	54	137	7	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g005360.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC204082	0.0	Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLe0086I08, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004239342.1	1e-168	nuclear transcription factor Y subunit B-6-like isoform X1
TrEMBL	A0A3Q7GBK0	1e-160	A0A3Q7GBK0_SOLLC; Uncharacterized protein
STRING	Solyc05g005360.1.1	1e-168	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14016	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	7e-34	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Solyc05g005360.1.1
Entrez Gene	101246137

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]