PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g007420.1.1

Common Name

TCP23

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 384aa MW: 42715.4 Da PI: 7.0482

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g007420.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.8	6.3e-41	84	257	2	137
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 ++k ++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+ + + s +ss ++s s+ Solyc05g007420.1.1 84 TKKPTTTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANYSsLNISLRSSRHHSASNyla 174 78999***********************************************************999997776666666666666666677 PP TCP 89 ..................................kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137 ++ +a+++ ++++++ + n ++ r k r++ ++ +++ +++n l+ Solyc05g007420.1.1 175 hnhnnfghvyhdrnyfngvglfssennsffpsgnLNMLQAKEELCDDHDDNDNDNDNNTGRIKRRSEDQDLLQNNYHMSNMLQ 257 77777899999999999999999999999999863333333444555555556677778899999998888888888887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.1E-41	88	248	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.636	90	144	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
METGHHHHDN IGNSIQRLNF PLQLLEKRDE VDHTTTICSS SLQLHPYNPT SLHMMTTSSS 60 DAPCVNHNQK SKTHQDKKQQ PQQTKKPTTT KDRHTKVDGR GRRIRMPATC AARVFQLTRE 120 LGHKSDGETI EWLLQQAEPA VIAATGTGTI PANYSSLNIS LRSSRHHSAS NYLAHNHNNF 180 GHVYHDRNYF NGVGLFSSEN NSFFPSGNLN MLQAKEELCD DHDDNDNDND NNTGRIKRRS 240 EDQDLLQNNY HMSNMLQSST YGSIPASHQI GQIPATTLYM MTNNNNNNNN NSSHHHDLNN 300 CSMWGSSSNN NDSIENSNIR GGILNFMNFH QPILGTRGDG GGTAAEGQWG MLTAAMNSYR 360 QSGGHASGSS NQRNEGDDHQ HHS*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

METGHHHHDN IGNSIQRLNF PLQLLEKRDE VDHTTTICSS SLQLHPYNPT SLHMMTTSSS  60
DAPCVNHNQK SKTHQDKKQQ PQQTKKPTTT KDRHTKVDGR GRRIRMPATC AARVFQLTRE  120
LGHKSDGETI EWLLQQAEPA VIAATGTGTI PANYSSLNIS LRSSRHHSAS NYLAHNHNNF  180
GHVYHDRNYF NGVGLFSSEN NSFFPSGNLN MLQAKEELCD DHDDNDNDND NNTGRIKRRS  240
EDQDLLQNNY HMSNMLQSST YGSIPASHQI GQIPATTLYM MTNNNNNNNN NSSHHHDLNN  300
CSMWGSSSNN NDSIENSNIR GGILNFMNFH QPILGTRGDG GGTAAEGQWG MLTAAMNSYR  360
QSGGHASGSS NQRNEGDDHQ HHS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.25950	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g007420.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
BioGRID	Solyc05g007420.1, Solyc03g006800.1, Solyc08g080150.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212306	0.0	Solanum lycopersicum cv. Heinz 1706, chromosome 05 BAC clone C05SLe0066O01,complete sequence
GenBank	GQ496340	0.0	Solanum lycopersicum TCP transcription factor 23 (TCP23) mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234594.1	0.0	TCP transcription factor 23
Refseq	XP_010320551.1	0.0	TCP transcription factor 23 isoform X1
Refseq	XP_010320552.1	0.0	TCP transcription factor 23 isoform X1
Refseq	XP_010320553.1	0.0	TCP transcription factor 23 isoform X1
TrEMBL	G3BGW2	0.0	G3BGW2_SOLLC; TCP transcription factor 23
STRING	Solyc05g007420.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13947	12	14
Representative plant	OGRP2699	12	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	8e-41	TCP family protein

Link Out ? help Back to Top
Phytozome	Solyc05g007420.1.1
Entrez Gene	100736460

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Parapunova V, et al. Identification, cloning and characterization of the tomato TCP transcription factor family. BMC Plant Biol., 2014. 14: p. 157 [PMID:24903607]