PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g009640.2.1

Common Name

LOC101260934

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 235aa MW: 26587.5 Da PI: 8.2706

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g009640.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.2	2.2e-11	83	127	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +Er+RR+ri + f L +l+P + K++Ka+iLe A I++L Solyc05g009640.2.1 83 HLLAERKRRKRISKLFVSLASLIPGL-----NKMDKASILEGAATLIRQL 127 7789*******************8.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-13	76	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.418	78	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-12	82	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.37E-8	83	127	No hit	No description
Pfam	PF00010	3.8E-9	83	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-11	84	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDDLALIFSH HNNGESSRKQ LHKEKEDEKA NSLACIISFN NNFENSLSIP KDEANNTISF 60 SNINNIIGAK FGERRSGEQA LEHLLAERKR RKRISKLFVS LASLIPGLNK MDKASILEGA 120 ATLIRQLGER AKEDDHHQST IGMMTKNNLL PEVEIKSLEK ELLITILLYK NQQKRNIDEI 180 LSVIQRLHLT IKTTNFMPFG TTSMHITVIA QMNDEFCETT DFLAEKLRSL ISKV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.24317	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g009640.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238949.2	1e-170	transcription factor bHLH18
TrEMBL	M1AZM0	1e-130	M1AZM0_SOLTU; Uncharacterized protein
STRING	Solyc05g009640.2.1	1e-169	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14501	9	10
Representative plant	OGRP656	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22750.2	4e-24	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc05g009640.2.1
Entrez Gene	101260934

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]