PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g010740.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 238aa MW: 26591 Da PI: 9.3531

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g010740.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	39.8	1.3e-12	1	27	102	128
NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 +kktLvfykgrap+gekt+Wvmheyrl Solyc05g010740.1.1 1 MKKTLVFYKGRAPRGEKTNWVMHEYRL 27 8************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	21.613	1	50	IPR003441	NAC domain
SuperFamily	SSF101941	5.23E-17	1	50	IPR003441	NAC domain
Pfam	PF02365	4.1E-5	1	27	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MKKTLVFYKG RAPRGEKTNW VMHEYRLIPN HPTEHTRYQD EWNVCRVLQK SNAGGKRYSS 60 NNNTLRIHVN PYTTLDQINP NTICISSQIM MPQVEHNTFQ LAMGKSSSSS SSAHTVINHP 120 DIQEVFRGVS SSNLMNLHPT LQSQMNNNLG GGNGFTISGL NFNLGGATTS QPGPPPPRPR 180 QDVSSSHVMM TAHDDQAGYG EDMSRFMVLK NSSHDLDNCW GMIYVVRILQ KIAYQTL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g010740.1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004246074.1	1e-116	NAC domain-containing protein 79
TrEMBL	K4BXP6	1e-178	K4BXP6_SOLLC; Uncharacterized protein
STRING	Solyc05g010740.1.1	1e-179	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA27792	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	4e-20	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Solyc05g010740.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]