PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g011810.2.1
Common NameLOC101258066
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 326aa    MW: 36162.7 Da    PI: 5.9927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g011810.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.85.1e-154493255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r +h+  E+rRR++iN++f+ Lr l+P+     ++K + a+ L ++++Y+++Lq
  Solyc05g011810.2.1 44 RSKHSVTEQRRRSKINERFQMLRNLIPHT----DQKRDTASFLFEVIQYVQYLQ 93
                        899*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.2E-2240114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1840114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.4214292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-124493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-144497No hitNo description
SMARTSM003535.5E-114898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKSGKGHHVE EEEDEYDFGS NRDATPSSNS TKDGKNSDKA NAIRSKHSVT EQRRRSKINE  60
RFQMLRNLIP HTDQKRDTAS FLFEVIQYVQ YLQDTVQKYE GSYQPWSSEP TKLMPWRNTQ  120
WRAQSFPANP QALNNGTDAG PTYSGRFDEN LLTVTSSMQA NQRNPLESHS GGDVKSMDQG  180
KELARTAIAT SMPLQASMPV PFQNDSAFSD SLPTPASDEC PRTTNALNDQ EFMVEGGTIN  240
FSNTYSQGLL NSLTHALQAT GLDLSQASIS VQINLGKRAN KERALGPSVA KDTENPPPAP  300
GDQFLEFRDT NNGEELNQAQ KRLKK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g011810.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0137867e-06Lycopersicon esculentum clone 132679F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010320831.10.0transcription factor BIM2-like isoform X2
SwissprotQ9CAA43e-90BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A3Q7H7T90.0A0A3Q7H7T9_SOLLC; Uncharacterized protein
STRINGSolyc05g011810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-92BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]