PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g013370.1.1

Common Name

LOC104647464

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 233aa MW: 26476.7 Da PI: 5.4577

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g013370.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.3	2.2e-14	11	49	12	50
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + k +++i KK ELS+LCd++++vi++ ++gk+ +++ Solyc05g013370.1.1 11 NYKKKKETIKKKTRELSILCDVKACVILVDPNGKVDTWP 49 689***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	10.33	1	52	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-13	7	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-11	9	48	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MEKKNKGNML NYKKKKETIK KKTRELSILC DVKACVILVD PNGKVDTWPE NPTDFNPIIQ 60 SYKENLCHGK RKRIDDDGCF EKKSKKNHAL FCDDDENQWL NDVFRESNES LLVKLNSKLE 120 AVDRRIEFLK MMNYGNGVVG GSSSSAKESL LANQETHNRL ENSNAYNQET EIAMAAEFWV 180 IGGDESANDR GKEIDFLRDN ATVNNLNNVQ NFGYDDHLWP VIAASEFSTC IN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g013370.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232703	0.0	Solanum lycopersicum chromosome 05 clone C05HBa0190L02, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010321181.1	1e-172	agamous-like MADS-box protein AGL82
TrEMBL	A0A3Q7H8V2	1e-171	A0A3Q7H8V2_SOLLC; Uncharacterized protein
STRING	Solyc05g013370.1.1	1e-172	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15958	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	5e-07	AGAMOUS-like 103

Link Out ? help Back to Top
Phytozome	Solyc05g013370.1.1
Entrez Gene	104647464

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]