PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g014040.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 291aa    MW: 32485.1 Da    PI: 9.8036
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g014040.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY41.72.3e-131481882059
                         S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY  20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +r+YY+C+++ +C++kk++e+s +d++++++  +g Hnh+
  Solyc05g014040.1.1 148 RTRNYYKCSTSkHCEAKKQIEKSPKDENIFVVSCSGGHNHD 188
                         68******9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.3E-5119189IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-10134190IPR003657WRKY domain
SuperFamilySSF1182903.92E-10145190IPR003657WRKY domain
PfamPF031066.8E-10146188IPR003657WRKY domain
PROSITE profilePS5081115.33150190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGDYDRDRGA IEKSCNISIR NNIVAPKLGL KSSHVWNYFD KPLAPSMTSF NGLSEIVSLD  60
FPIARQDRSY DQVIITNQNN NEQLYLHTIQ SVQFIQQTVV PQSRTMVACV PPITTPQKCI  120
DLQQQPDIRA NIHPNLTFSM KTPLTQSRTR NYYKCSTSKH CEAKKQIEKS PKDENIFVVS  180
CSGGHNHDPP MNRRYLASCN NDSKFKIPKG INSLPKASIL NASSSSSMRI KHSRVVTSPI  240
IATKPTLEIG SKNKMVVAVV QNKGDDNIKV NMTEDIFMGI DQLQRATTST *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g014040.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773000.11e-151probable WRKY transcription factor 14
TrEMBLK4BYC40.0K4BYC4_SOLLC; Uncharacterized protein
STRINGSolyc05g014040.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-11WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]