PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g014590.2.1

Common Name

LOC101260639

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 232aa MW: 26551.2 Da PI: 5.7533

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g014590.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	46	91	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er RR++++++++ Lr l+Pk +K++Ka+i++ A+eYI +Lq Solyc05g014590.2.1 46 NIVSERIRRNKLKEKLFALRALVPKI-----TKMDKASIVKDAIEYIVKLQ 91 5567*******************7.....7*************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.49E-11	39	93	No hit	No description
PROSITE profile	PS50888	15.097	41	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.19E-15	44	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-10	46	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-12	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-15	47	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MENMVEENNN YLETTILFQQ DSYLDEPIMS SYYDSTSPEG SQSSKNIVSE RIRRNKLKEK 60 LFALRALVPK ITKMDKASIV KDAIEYIVKL QKQDRRIRGE ISKLESETSN KNSTHLQHET 120 FDFSNPKTLD EHQYGYHSSP IDVLQLRVSS MRDRIVVVNL TCIKRKDTMI KLCDVFESLN 180 IKIITTNIIA YSETLLNTTY IEADVEESNL LMLRIQSAIA SLNNSDSPLS S*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.9306	0.0	flower\| fruit

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g014590.2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004239187.1	1e-168	transcription factor bHLH35 isoform X1
TrEMBL	A0A3Q7GGV4	1e-167	A0A3Q7GGV4_SOLLC; Uncharacterized protein
STRING	Solyc05g014590.2.1	1e-167	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2923	24	51
Representative plant	OGRP2753	13	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	7e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc05g014590.2.1
Entrez Gene	101260639

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]