PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g015330.1.1

Common Name

LOC101265544

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YC

Protein Properties

Length: 145aa MW: 16239.7 Da PI: 9.9564

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g015330.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.5	1.3e-17	22	106	15	98
NF-YC 15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 + ++ ++P++r+kki+k d+d+++i +ea l++ + elf+ l+ +s a e+kr+t+k + av+r + + dfl+d p Solyc05g015330.1.1 22 ETHQLQIPISRVKKIMKLDQDINKINSEALYLIASSTELFLELLAEKSAQVALEKKRKTIKLEHLRVAVKRHKpTSDFLLDSLPM 106 5567899*******************************9999*********************9976489***9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.1E-20	21	107	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.4E-21	23	91	IPR009072	Histone-fold
Pfam	PF00808	1.5E-19	27	90	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MTRVLDTMPG EDEEGTSTVA GETHQLQIPI SRVKKIMKLD QDINKINSEA LYLIASSTEL 60 FLELLAEKSA QVALEKKRKT IKLEHLRVAV KRHKPTSDFL LDSLPMPSQP LDRSPKVQSR 120 PRSSTDNPLP SGTRRIEAFF QKCT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g015330.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004239516.2	1e-101	nuclear transcription factor Y subunit C-2
TrEMBL	A0A3Q7GII1	1e-100	A0A3Q7GII1_SOLLC; Uncharacterized protein
STRING	Solyc05g015330.1.1	1e-101	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11435	24	25
Representative plant	OGRP9472	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	5e-48	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Phytozome	Solyc05g015330.1.1
Entrez Gene	101265544

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]