PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g017740.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 175aa    MW: 20314.2 Da    PI: 6.5131
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g017740.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.4e-111299294
                        EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                        +k+ ++  +  ++ + lp  f+++++++   sk   l++ e g sWe k+  rkk++ ++ +k W +Fv  ++++ +D+++F+l+++s+  l+
  Solyc05g017740.1.1 12 CKIILSRETVMNK-MQLPSCFVKDNKKI--LSKNCLLKTsEAGMSWEAKI-ARKKPNYFICEKDWPQFVLHHQVEPRDILIFSLIEKST--LH 98
                        5555444444444.99*******99866..666777777699********.6999999*************************997444..35 PP

                        E CS
                  B3 94 v 94
                        v
  Solyc05g017740.1.1 99 V 99
                        5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-155107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-155105IPR015300DNA-binding pseudobarrel domain
CDDcd100177.46E-89100No hitNo description
PROSITE profilePS508639.81210105IPR003340B3 DNA binding domain
PfamPF023621.5E-91196IPR003340B3 DNA binding domain
SMARTSM010199.8E-511105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MLMDTDQPPS FCKIILSRET VMNKMQLPSC FVKDNKKILS KNCLLKTSEA GMSWEAKIAR  60
KKPNYFICEK DWPQFVLHHQ VEPRDILIFS LIEKSTLHVR PYTPKNCRNI TRKRQLSYEE  120
LSSSSSSEEE IGPSKRVKKM EPIIVVSDTE EEYVDMSFSD DDEDDPPYSH RATY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g017740.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075920.21e-112uncharacterized protein LOC107020115
TrEMBLK4BZ341e-125K4BZ34_SOLLC; Uncharacterized protein
STRINGSolyc05g017740.1.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.15e-07B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]