PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g032780.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 213aa MW: 24417.8 Da PI: 5.0558

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g032780.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	81.6	2e-25	90	187	1	91
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 a+g+k rhs ++T++g++dRRvRls ++a++f+d+qd+LG+d++ k+i+ L+++ak i++l + +++ +s ++++ + s ++++s+ Solyc05g032780.1.1 90 ATGRKYRHSNVSTAKGPKDRRVRLSPNTAIQFYDVQDRLGYDRPCKAIDSLIKEAKVTIDALGEFPNNFHSTKlNPKKMQYSFDQEQSPef 180 589***********************************************************99944444333455555555555554434 PP TCP 89 ....kaa 91 + Solyc05g032780.1.1 181 sqenRGV 187 3222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.5E-23	91	185	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	22.611	93	151	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MNHQCQVSDE EDGSEEEEEE EEEVFQENDI GNLQSHYQNQ QMPQSVCENP EKWANFTVSG 60 QELNKGTRRL KPKRAKTDVI EGHGGRIIRA TGRKYRHSNV STAKGPKDRR VRLSPNTAIQ 120 FYDVQDRLGY DRPCKAIDSL IKEAKVTIDA LGEFPNNFHS TKLNPKKMQY SFDQEQSPEF 180 SQENRGVPNS ECGVQDKQQE VNYDIPNMFS LY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	8e-17	98	151	1	54	Putative transcription factor PCF6
5zkt_B	8e-17	98	151	1	54	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g032780.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243474	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-56p20 map 1, complete sequence
GenBank	AC246078	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-12e23 map 1, complete sequence
GenBank	AC246581	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-67d8 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015069120.1	1e-132	transcription factor TCP10-like
TrEMBL	A0A3Q7GIV4	1e-158	A0A3Q7GIV4_SOLLC; Uncharacterized protein
STRING	Solyc05g032780.1.1	1e-159	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4112	21	45
Representative plant	OGRP180	15	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	3e-33	TCP family protein

Link Out ? help Back to Top
Phytozome	Solyc05g032780.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]