PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g041100.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 228aa    MW: 26522.4 Da    PI: 4.5925
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g041100.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.67.9e-128761991
                        -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                        p ++++  +g+   +  ++l+d+ g+ W + +  +k  + ++++ GW++F k+n ++ gDf++F +dg++ f 
  Solyc05g041100.1.1  8 PTTYTDYVDGI--LPSNIILRDRFGNMWPIGV--TKEAKDIYFEYGWEKFIKDNIVELGDFFIFDFDGTRIFD 76
                        55555333555..4557***************..*******************************99876664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.239183IPR003340B3 DNA binding domain
SMARTSM010190.0016383IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-14685IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-6772No hitNo description
Gene3DG3DSA:2.40.330.103.5E-13785IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-91675IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGFFKKLPTT YTDYVDGILP SNIILRDRFG NMWPIGVTKE AKDIYFEYGW EKFIKDNIVE  60
LGDFFIFDFD GTRIFDFTLL GRNGCVKKGV GSLKINVKEE EVEEMNVEHQ NSVESKENTR  120
ARDSKNISSF DITDENTLVE EKEDEQKEYE NREDVPEEEG EKEEPDEYKE DEDDKERTGI  180
LKKNDNTFQR RQFATNIFRS GGGTKPKKCF LRDKNTPRKE KSSVRSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g041100.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886771.11e-109B3 domain-containing protein REM21-like
RefseqXP_025886772.11e-109B3 domain-containing protein REM21-like
TrEMBLA0A3Q7GLC71e-155A0A3Q7GLC7_SOLLC; Uncharacterized protein
STRINGSolyc05g041100.1.11e-163(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Representative plantOGRP8585614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.17e-13B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]