PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g041220.1.1
Common NameLOC101254300
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SAP
Protein Properties Length: 451aa    MW: 50345.3 Da    PI: 6.2272
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g041220.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP698.57.8e-2131545027455
                 SAP  27 gesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiy 117
                         ge  ++s++ +r  n+vwpePf+e la  vaidas+slGrlaaa+ala +fqvcstw+avs sd+lwq+ltrriW+r +llr+tWreeyiy
  Solyc05g041220.1.1  15 GEGPSSSRRGRRVGNDVWPEPFVEDLALLVAIDASHSLGRLAAAQALALIFQVCSTWQAVSHSDMLWQNLTRRIWNRHELLRQTWREEYIY 105
                         22233444456799***************************************************************************** PP

                 SAP 118 rhrtarnfrtrrysyvtlqfdpadv.........dedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsr 199
                         +h+ta+nf + ry+y tl+f p ++         +++n++d+l Cr+lalsd++laaGf++G+v+lf l  rlh+st++p+hrdrlGrfsr
  Solyc05g041220.1.1 106 WHQTANNFLHHRYTYNTLHFVPQNNvdgddddndNNNNNNDSLFCRRLALSDHHLAAGFSNGSVQLFFLPRRLHLSTYHPHHRDRLGRFSR 196
                         ********************9864222221111123456789************************************************* PP

                 SAP 200 avsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPe 290
                         avsGi++sd +lvfa+ldGdihv vi    aa++rra+lGdvvndGalvdf+Gs++WwvGlyaGvpGrafhiW+ eteelvfvGG ltdPe
  Solyc05g041220.1.1 197 AVSGIILSDVQLVFASLDGDIHVVVIGD--AAPPRRAHLGDVVNDGALVDFTGSDQWWVGLYAGVPGRAFHIWNRETEELVFVGGELTDPE 285
                         **************************98..78*********************************************************** PP

                 SAP 291 avmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrfr 381
                         a+mGWh+ltelte+vGr+rvt retavaCtsl+l+v+dl+nqg+++r + +rrG+iv+s+da+ne++v+vd+rG+a+vrr++nlee +rf+
  Solyc05g041220.1.1 286 ALMGWHLLTELTEIVGRIRVTTRETAVACTSLQLMVIDLQNQGIIIRAQPSRRGIIVASFDAYNETLVAVDTRGMANVRRADNLEERSRFT 376
                         ******************************************************************************************* PP

                 SAP 382 vrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsssdgtihlldfgaq 455
                         vrg  qrgv+gCvnggy+ ++ g v+rvW+ie+ + ylys+ er+g+vna++ad+r+v ++ssd+tihl+dfgaq
  Solyc05g041220.1.1 377 VRGaNQRGVVGCVNGGYGFMWLGNVVRVWDIENGN-YLYSFGERTGDVNAIIADERYVVACSSDATIHLWDFGAQ 450
                         ***99***************************976.*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.504.6E-658117No hitNo description
SuperFamilySSF813831.98E-659108IPR001810F-box domain
SuperFamilySSF509989.02E-14109448IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:2.130.10.101.4E-11145227IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.101.4E-11290447IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029411.128402450IPR017986WD40-repeat-containing domain
PROSITE profilePS500828.771429450IPR001680WD40 repeat
PROSITE patternPS006780433447IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSSSQSPPSS LGGGGEGPSS SRRGRRVGND VWPEPFVEDL ALLVAIDASH SLGRLAAAQA  60
LALIFQVCST WQAVSHSDML WQNLTRRIWN RHELLRQTWR EEYIYWHQTA NNFLHHRYTY  120
NTLHFVPQNN VDGDDDDNDN NNNNNDSLFC RRLALSDHHL AAGFSNGSVQ LFFLPRRLHL  180
STYHPHHRDR LGRFSRAVSG IILSDVQLVF ASLDGDIHVV VIGDAAPPRR AHLGDVVNDG  240
ALVDFTGSDQ WWVGLYAGVP GRAFHIWNRE TEELVFVGGE LTDPEALMGW HLLTELTEIV  300
GRIRVTTRET AVACTSLQLM VIDLQNQGII IRAQPSRRGI IVASFDAYNE TLVAVDTRGM  360
ANVRRADNLE ERSRFTVRGA NQRGVVGCVN GGYGFMWLGN VVRVWDIENG NYLYSFGERT  420
GDVNAIIADE RYVVACSSDA TIHLWDFGAQ *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence and floral meristems, young floral organ primordia, and later in ovule primordia.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g041220.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240330.10.0transcriptional regulator STERILE APETALA-like isoform X1
SwissprotQ9FKH11e-161SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A3Q7GLE30.0A0A3Q7GLE3_SOLLC; Uncharacterized protein
STRINGSolyc05g041220.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40992345
Representative plantOGRP9756912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-157SAP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]