PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g045800.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 254aa MW: 28485.2 Da PI: 9.5319

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g045800.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	83	2.9e-26	123	181	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK +kg +fpr+YY+C+++ +C++kk++e+s++d++++ + +geHnh+ Solyc05g045800.1.1 123 NDKWAWRKYGQKYIKGFTFPRNYYKCSTSkQCEAKKQIEKSSKDENIFLVSCSGEHNHD 181 8***********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.1E-26	113	183	IPR003657	WRKY domain
SuperFamily	SSF118290	6.93E-23	116	183	IPR003657	WRKY domain
PROSITE profile	PS50811	27.795	117	183	IPR003657	WRKY domain
SMART	SM00774	4.5E-25	122	182	IPR003657	WRKY domain
Pfam	PF03106	4.9E-21	123	181	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MRDDNRDIGV VARSFNINKP NNVIAPKLGL NASHFWNYFD RPLAPCMNSF TGSSEIVSLD 60 LPITLQERSY DQVIITNQNS NQQLYLHSIT PFQFIQQITV PQSRTTVECA PPTTTQSQEE 120 LTNDKWAWRK YGQKYIKGFT FPRNYYKCST SKQCEAKKQI EKSSKDENIF LVSCSGEHNH 180 DPPMSRRYLV SCNNNSKLKL PKGINISPKE SIFNASSSSS KRVKHSTDVA SPIIGTKPPL 240 EIGSKKNGCC GLA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-16	115	183	7	74	WRKY transcription factor 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g045800.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010321551.1	1e-151	probable WRKY transcription factor 27
TrEMBL	K4C0R3	0.0	K4C0R3_SOLLC; Uncharacterized protein
STRING	Solyc05g045800.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3668	13	45
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	2e-25	WRKY DNA-binding protein 27

Link Out ? help Back to Top
Phytozome	Solyc05g045800.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]