PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g048740.2.1
Common NameLOC101249086
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 216aa    MW: 23677 Da    PI: 4.8347
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g048740.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.45.2e-43541531100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+
  Solyc05g048740.2.1  54 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELPEEQRVDAVNSMVYEANARIRDPVYGCAGAICQLQKQISELQ 144
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ae a++++e
  Solyc05g048740.2.1 145 AEFAKAQAE 153
                         *****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.37953154IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4254151IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MECSDHKTTT TISSMNSSSS TFASTISTTP TSGLLSPKSS ILLSTPPMNV VLSPCAACKI  60
LRRRCVEKCV LAPYFPPTDP LKFTIAHRVF GASNIIKMLQ ELPEEQRVDA VNSMVYEANA  120
RIRDPVYGCA GAICQLQKQI SELQAEFAKA QAEILNLKCQ NSNLLALVCM EVSENSSNSL  180
LLSSDHINDY ENNNDNTSMF LEDNNLYGAW EPLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-435315910116LOB family transfactor Ramosa2.1
5ly0_B1e-435315910116LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g048740.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2127922e-11Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240278.11e-159LOB domain-containing protein 1-like
SwissprotQ9LQR05e-72LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A3Q7GHV21e-158A0A3Q7GHV2_SOLLC; Uncharacterized protein
STRINGSolyc05g048740.2.11e-158(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-72LOB domain-containing protein 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]