PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g049860.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 102aa MW: 11854.5 Da PI: 10.8325

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g049860.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	46.7	7.1e-15	10	61	3	56
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 r++Wtp+ ++F ea+++LG ekAt ile m+v+ Lt+++v LQ+YR++ Solyc05g049860.1.1 10 RIKWTPNVNKKFNEAIRRLG--EKATAIPILEYMNVPQLTRKQVENRLQQYRVH 61 99***************6..5566666*********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-15	6	61	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.7E-10	7	62	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-12	10	62	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MEERKERRLR IKWTPNVNKK FNEAIRRLGE KATAIPILEY MNVPQLTRKQ VENRLQQYRV 60 HQLAQHASSS SSLVLANPPN VLNSHDELQH TCNNTFFSST R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g049860.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019069539.1	5e-70	putative two-component response regulator ARR20 isoform X1
TrEMBL	A0A3Q7HED4	1e-34	A0A3Q7HED4_SOLLC; Uncharacterized protein
STRING	Solyc05g049860.1.1	2e-69	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA28093	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.3	3e-10	myb-related protein 1

Link Out ? help Back to Top
Phytozome	Solyc05g049860.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]