PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g050170.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 186aa MW: 21158.1 Da PI: 6.0749

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g050170.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	18	40	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ C+++F + s++++Hi+ H Solyc05g050170.1.1 18 FCTVCNEMFHTYSEFVNHIQItH 40 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	19	40	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MHNANFSPFS GPSPILHFCT VCNEMFHTYS EFVNHIQITH PLSSEQDIIL HSSVYASVTF 60 LPGNPLSTQP AAPRNVRPER NNNIVIMPTP SSNLNHPMIS RDRALPIDRQ LMARRNWFVP 120 IRRGTTPIMD REQMEKRNMV ESSREAIADR TIPLIDQLDV PISSNANELI NIDEEHIDLD 180 LELRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g050170.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU914757	2e-81	S.lycopersicum DNA sequence from clone LE_HBa-34P15, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3Q7GKE6	1e-132	A0A3Q7GKE6_SOLLC; Uncharacterized protein
STRING	Solyc05g050170.1.1	1e-132	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14568	2	2

Link Out ? help Back to Top
Phytozome	Solyc05g050170.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]