PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g050330.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 245aa    MW: 27538.3 Da    PI: 6.283
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g050330.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.51e-21128184258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         +Dg nWrKYGqK + g+++pr Y++C + +C ++k v++ +++p  +e tY g+H +
  Solyc05g050330.2.1 128 KDGLNWRKYGQKLILGAKYPREYFQCVYCHCDATKMVQQIEKEPLSFEATYGGSHSC 184
                         7******************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.616122183IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-20123186IPR003657WRKY domain
SuperFamilySSF1182901.57E-20126186IPR003657WRKY domain
SMARTSM007741.2E-21127186IPR003657WRKY domain
PfamPF031066.3E-20128184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGENSFWERE VVITELTKGK ELMLQLQKHF DPMKQDVCRY LAAEILSSYD KAMSLLNGTA  60
LSGMMSKSKE IINPAPSSST APQLEFPQLL ADSSTKSCDL PSKLRKRKTL APRTEYVEAR  120
PGEEVSPKDG LNWRKYGQKL ILGAKYPREY FQCVYCHCDA TKMVQQIEKE PLSFEATYGG  180
SHSCGQENKN QNEEVLVTVE TQVGRAAGQL SECYIPEMVL TQNNSYKTKY PSDSTYDTIL  240
QLFS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.102290.0flower| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO43812450.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g050330.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772695.11e-149probable WRKY transcription factor 41
TrEMBLA0A3Q7GLM11e-158A0A3Q7GLM1_SOLLC; Uncharacterized protein
STRINGSolyc05g050330.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120611123
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-25WRKY family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]