PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g050790.1.1
Common NameLOC104647682
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 190aa    MW: 21960.9 Da    PI: 10.5027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g050790.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.1e-1863113255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp++ g  +r +lg++ t+e+Aa a+++ + kl+g
  Solyc05g050790.1.1  63 RYRGVRRRP-WGKFAAEIRDPKKKG--ARLWLGTYVTPEDAALAYDRTAFKLKG 113
                         8********.**********96643..************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.26E-3062123No hitNo description
SuperFamilySSF541711.18E-2163122IPR016177DNA-binding domain
SMARTSM003809.4E-3463127IPR001471AP2/ERF domain
PfamPF008473.6E-1263113IPR001471AP2/ERF domain
PROSITE profilePS5103223.61763121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-3063122IPR001471AP2/ERF domain
PRINTSPR003674.0E-126475IPR001471AP2/ERF domain
PRINTSPR003674.0E-12103123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MHQENSTQFD LSILDSPLEH QFNGFNLESI SFDRSIDHTW EKIDKNEDNI PRSSSQVSNN  60
WKRYRGVRRR PWGKFAAEIR DPKKKGARLW LGTYVTPEDA ALAYDRTAFK LKGTRALLNF  120
PHLIDTNVAE LNRVRPKQRS RLSEIIKGEE IPSPKRRNPQ LINNIAKVNS IIHMFEITSL  180
AFHPQGENK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2962127469ATERF1
3gcc_A2e-2962127469ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g050790.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321615.11e-139ethylene-responsive transcription factor 13-like
TrEMBLA0A3Q7HEW41e-127A0A3Q7HEW4_SOLLC; Uncharacterized protein
STRINGSolyc05g050790.1.11e-138(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-38ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]