PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g051180.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 211aa    MW: 23943.2 Da    PI: 6.1462
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g051180.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.3e-164999255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y GVr ++ +g+++AeIrd + ng   r++lg+f +aeeAa a+++ +  ++g
  Solyc05g051180.1.1 49 HYIGVRARP-WGKFAAEIRDSTRNG--IRVWLGTFNSAEEAALAYDQVAFLMRG 99
                        799******.**********44465..**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.03E-2648108No hitNo description
PROSITE profilePS5103220.08649107IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-2149109IPR016177DNA-binding domain
SMARTSM003805.3E-3249113IPR001471AP2/ERF domain
PfamPF008479.6E-114999IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-2849108IPR001471AP2/ERF domain
PRINTSPR003671.7E-85061IPR001471AP2/ERF domain
PRINTSPR003671.7E-87389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MILKIQDEKQ SSDSVESSIS LEDTSSSDTY SFNKENGFHS ERPKKEIKHY IGVRARPWGK  60
FAAEIRDSTR NGIRVWLGTF NSAEEAALAY DQVAFLMRGP TTCLNFPVER VSKMLEETEI  120
CNFFKNGLSP AAALKEKHKR RSSSNISRKK KQKVNHEEEI NNNNNNNNNN VDNNNNNNNN  180
NNNNNNNVFT FEDLGSELLD ELLSEYSNSN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2848108161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136149KHKRRSSSNISRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g051180.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321614.21e-151ethylene-responsive transcription factor 1B-like
TrEMBLA0A3Q7HF341e-110A0A3Q7HF34_SOLLC; Uncharacterized protein
STRINGSolyc05g051180.1.11e-151(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-37ethylene response factor 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]