PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g051420.1.1

Common Name

LOC104647583

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ZF-HD

Protein Properties

Length: 168aa MW: 19300.4 Da PI: 10.3555

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g051420.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	83.9	1.9e-26	3	51	5	59
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +YkeClkNhAa +GghavDGCgEfmps + +kCa C+CHRnFHR+++++ Solyc05g051420.1.1 3 KYKECLKNHAAGIGGHAVDGCGEFMPS------GDIFKCAVCNCHRNFHRKDTVH 51 8***********************9......3569************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-15	2	49	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.4E-24	3	48	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.3E-23	3	49	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.551	4	48	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.9E-15	99	163	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-26	102	164	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.1E-23	102	158	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MSKYKECLKN HAAGIGGHAV DGCGEFMPSG DIFKCAVCNC HRNFHRKDTV HHHHPCGYFP 60 HIMPRRRSLV LPSTSRGGGF REDQELLEMC NPNKNIIGTL LKKRFRTKFS QEHKDKMLRL 120 AEKLGWKLQR HDEGVVQQLC NEIGIKRHVF KVWLHNNKHT LGKKTNP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-21	103	160	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g051420.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU407318	9e-10	S.lycopersicum DNA sequence from clone SL_MboI-118B3 on chromosome 4, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010321484.1	1e-123	zinc-finger homeodomain protein 1-like
Swissprot	Q6YXH5	2e-54	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A3Q7GNF8	1e-121	A0A3Q7GNF8_SOLLC; Uncharacterized protein
STRING	Solyc05g051420.1.1	1e-122	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	3e-55	homeobox protein 21

Link Out ? help Back to Top
Phytozome	Solyc05g051420.1.1
Entrez Gene	104647583

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]