PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g054400.2.1
Common NameLOC101266030
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 198aa    MW: 21531.6 Da    PI: 10.4196
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g054400.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.5e-193266135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  Solyc05g054400.2.1 32 CADCGTTKTPLWRGGPAGPKSLCNACGIKSRKKRR 66
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.2E-142676IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4922662IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.52E-122766No hitNo description
CDDcd002023.67E-123166No hitNo description
Gene3DG3DSA:3.30.50.108.2E-153165IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034403257IPR000679Zinc finger, GATA-type
PfamPF003208.2E-173266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVDLSDKQGL GSEEMSSGVT SPETSQSNVK TCADCGTTKT PLWRGGPAGP KSLCNACGIK  60
SRKKRRAFLG LNNEEKKSKK SVVVGHKNIE VQHHLNQSCS SSSNSDDSKS SNFVKNIVSS  120
SLKKKLLPFG KEEVVMQRPR SRSTQKRKLG EVEQAAFLLM ALSCGSFYTH GRMKIDKERK  180
NEKCCTLGSK SSTLWVG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.76072e-53flower| fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g054400.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321383.11e-142GATA transcription factor 15-like isoform X1
RefseqXP_015076166.11e-142GATA transcription factor 15-like isoform X1
TrEMBLA0A3Q7GKJ21e-141A0A3Q7GKJ2_SOLLC; Uncharacterized protein
STRINGSolyc05g054400.2.11e-142(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-30GATA transcription factor 15
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]