PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g007390.2.1
Common NameLOC101260823
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 239aa    MW: 26192.1 Da    PI: 8.8567
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g007390.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.39.9e-42521511100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrrkCa++C+++pyf  ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdPvyG++g i++l+qq+++l+
  Solyc06g007390.2.1  52 PCAACKLLRRKCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLNQQVQSLQ 142
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         +el+++++e
  Solyc06g007390.2.1 143 VELNATRAE 151
                         ****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.57751152IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-4152149IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSTKRERLDE IIGKKLKIEN IDASSKLHMQ QIMGRRHIIL EPSCTKLNTI IPCAACKLLR  60
RKCAEECPFS PYFSPHEPQK FAAVHKVFGA SNVSKLLMEV PESQRADAAN SLVYEANVRL  120
RDPVYGCMGA ISTLNQQVQS LQVELNATRA EILRYKYREV TNNLIIASTG IGATVAVAEL  180
PQAPSTPTHP PRPPPPQESF GLVVPSCSSP PSTQSVYATP SSRANFSVIS NNNVPYFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-455216211121LOB family transfactor Ramosa2.1
5ly0_B2e-455216211121LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g007390.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240624.11e-176LOB domain-containing protein 15-like
SwissprotQ9AT614e-70LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A3Q7GRX21e-175A0A3Q7GRX2_SOLLC; Uncharacterized protein
STRINGSolyc06g007390.2.11e-176(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.15e-73LOB domain-containing protein 13
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]