PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g008200.2.1

Common Name

LOC101263818

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 477aa MW: 51755.4 Da PI: 4.7409

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g008200.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.1	4.7e-34	263	317	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ Solyc06g008200.2.1 263 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 317 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.436	260	320	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-31	261	319	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.73E-18	261	317	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-25	263	317	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-10	265	316	IPR001005	SANT/Myb domain
Pfam	PF14379	4.1E-24	348	395	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MEARPALSVQ RTGAHQLSNF GASGAHSSLP VLQTSLEEKY PKLPGSALSS FPSNSGAVGH 60 LFSSPSEFST NLDFSSVLPY DEHLAPATFI SQPTINEASI PLANSGVLQG AASSQYVNVN 120 SESWCTELLP DYLDYSVNAP VQNTQLDCRN SDDCQIPPED PSKQSDWPEW ADLVMSDDDA 180 LTSSWMVDTS IADAEPKMQY QEQNQLSNFP VHQVQPFQQI PTASVETSAV VPASVETSAV 240 VPASVETSAV VPASSTGSGS SSKQRMRWTP ELHEAFVEAV NKLGGSERAT PKGVLKLMKV 300 EGLTIYHVKS HLQKYRTARY KPEASEGSSE KKESSIGDLS ALDLKTGIEI TEALRLQMEV 360 QKQLHEQLEI QRNLQLRIEE QGRCLQMMFE KQCKSMPGID LAKGSSSMAE DASAQLNDAV 420 QSSSNKNDPG ASLVGHHEAG SHTTQQLVRE KQKEHEREDI TSSSNSPPTK RAKVDE*

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MEARPALSVQ RTGAHQLSNF GASGAHSSLP VLQTSLEEKY PKLPGSALSS FPSNSGAVGH  60
LFSSPSEFST NLDFSSVLPY DEHLAPATFI SQPTINEASI PLANSGVLQG AASSQYVNVN  120
SESWCTELLP DYLDYSVNAP VQNTQLDCRN SDDCQIPPED PSKQSDWPEW ADLVMSDDDA  180
LTSSWMVDTS IADAEPKMQY QEQNQLSNFP VHQVQPFQQI PTASVETSAV VPASVETSAV  240
VPASVETSAV VPASSTGSGS SSKQRMRWTP ELHEAFVEAV NKLGGSERAT PKGVLKLMKV  300
EGLTIYHVKS HLQKYRTARY KPEASEGSSE KKESSIGDLS ALDLKTGIEI TEALRLQMEV  360
QKQLHEQLEI QRNLQLRIEE QGRCLQMMFE KQCKSMPGID LAKGSSSMAE DASAQLNDAV  420
QSSSNKNDPG ASLVGHHEAG SHTTQQLVRE KQKEHEREDI TSSSNSPPTK RAKVDE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-32	263	321	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-32	263	321	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-32	263	321	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-32	263	321	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-32	263	321	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-32	263	321	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-32	263	321	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-32	263	321	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.1998	0.0	callus\| flower\| fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g008200.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240480.1	0.0	protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
TrEMBL	A0A3Q7GPJ7	0.0	A0A3Q7GPJ7_SOLLC; Uncharacterized protein
STRING	Solyc06g008200.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2753	23	49
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	2e-78	phosphate starvation response 1

Link Out ? help Back to Top
Phytozome	Solyc06g008200.2.1
Entrez Gene	101263818

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]