PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g009430.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 224aa MW: 25987.3 Da PI: 7.711

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g009430.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.1	1.6e-11	14	57	5	48
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +Ed +l++ + +G g+W++ a+ g++R++k+c++rw++yl Solyc06g009430.1.1 14 SSDEDSKLIHSISIFGQGRWNSLAHVAGLKRSGKSCRLRWLNYL 57 789***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.516	1	61	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.5E-16	8	56	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-11	9	59	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.47E-16	14	85	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-10	14	57	IPR001005	SANT/Myb domain
CDD	cd00167	6.66E-8	14	57	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.7E-5	57	84	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MKQVLTEMKK GPCSSDEDSK LIHSISIFGQ GRWNSLAHVA GLKRSGKSCR LRWLNYLRPN 60 LRRGKITPQE KLLILLLHFR FGNRTKVQKH AKELHCEINS QQFRHLLLYQ WIPSLLAQQI 120 STSSSSSSSS ELIVKENYSL NDINTYPNVN IISSTDSLVR EDSNIWNNLS SFEDRINVPH 180 DISTPSDMTL HYYSSHDEDD QYYFHNYWTS AEMSSLYEMD LWL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g009430.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015078167.1	1e-130	transcription factor MYB78-like
TrEMBL	A0A1U8FGX4	1e-82	A0A1U8FGX4_CAPAN; transcription factor MYB108
STRING	Solyc06g009430.1.1	1e-164	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15393	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	1e-39	myb domain protein 112

Link Out ? help Back to Top
Phytozome	Solyc06g009430.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]