PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g033820.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22657.4 Da    PI: 7.2522
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g033820.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF321.6e-10958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        k+ie+   rq  + k +  i KK  EL  LC+ ++a++++s++g++  ys
  Solyc06g033820.1.1  9 KKIEDPVSRQQFYLKCKDIIVKKSDELGFLCNSNIALLMVSQNGEVTSYS 58
                        6899*******************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.638161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-6160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-13372IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-121057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDRNKIMRKK IEDPVSRQQF YLKCKDIIVK KSDELGFLCN SNIALLMVSQ NGEVTSYSRG  60
ESFEDIMVKA MNQPVQLNRR SIPNPDEEHL MQSLVQSKSE RGMIEKIAMY DTLLFSSSFI  120
LIYFFVVVLF YMIEKFLLFL LGVFTMLMIG QRASVLSSYE PQVENINTTE EADAYKEYIL  180
GAIERVQRSK VSISKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g033820.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078430.22e-60agamous-like MADS-box protein AGL66
TrEMBLA0A3Q7GTX21e-140A0A3Q7GTX2_SOLLC; Uncharacterized protein
STRINGSolyc06g033820.1.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.23e-09MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]