PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g033830.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 114aa    MW: 13058.8 Da    PI: 8.4357
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g033830.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.27.8e-17958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        k+ie+   r+  +skR+ g+ KK +EL v C +++a+++fs+tg++ +ys
  Solyc06g033830.1.1  9 KKIEDPESRKHFYSKRKDGLVKKSNELGVVCHTNIALLMFSPTGEVTTYS 58
                        689999999****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.236161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-18160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-20277IPR002100Transcription factor, MADS-box
CDDcd001201.26E-17258No hitNo description
PRINTSPR004048.8E-14323IPR002100Transcription factor, MADS-box
PfamPF003199.0E-181057IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MGRNKVVMKK IEDPESRKHF YSKRKDGLVK KSNELGVVCH TNIALLMFSP TGEVTTYSRA  60
KSSYEPQVEN INNVEEADAY KGYLLGAMER VQRSKEPLGD ERFDELNWIT MER*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g033830.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2447382e-06Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-67k3 map 10, complete sequence
GenBankAC2449062e-06Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-1f11 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322056.12e-52MADS-box protein defh21-like
TrEMBLK4C4K75e-79K4C4K7_SOLLC; Uncharacterized protein
STRINGSolyc06g033830.1.19e-80(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2824522
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.15e-15AGAMOUS-like 17
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]