PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g035700.1.1
Common NameLOC101268109
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 179aa    MW: 19263.4 Da    PI: 4.5739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g035700.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.5e-152977255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++G+r++  +g+Wv+eIr+p++   ++r++lg+f  +e+Aa a++ a+++l+g
  Solyc06g035700.1.1 29 NFRGIRQR--NGKWVSEIREPRK---TTRIWLGTFPIPEMAAVAYDVAALALKG 77
                        589**975..6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.5E-92877IPR001471AP2/ERF domain
CDDcd000181.17E-282886No hitNo description
PROSITE profilePS5103219.6122985IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-272986IPR001471AP2/ERF domain
SMARTSM003806.4E-302991IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-173086IPR016177DNA-binding domain
PRINTSPR003678.3E-73041IPR001471AP2/ERF domain
PRINTSPR003678.3E-76787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MAAYHFNDNS PSLENLSPTG GGSSTRHPNF RGIRQRNGKW VSEIREPRKT TRIWLGTFPI  60
PEMAAVAYDV AALALKGPDA QLNFPDRAYS YPVPASLSAA DIRTAAANAA AARAPPLSEI  120
NTAAGGGQGQ EFVDEEEIFG MPKLLDDMAE AMLVSPPRMH QYDESPENSD ADSLWGYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-131685172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.136900.0callus| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO58895890.0
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g035700.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240742.11e-129ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ901e-51ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A3Q7GUB51e-128A0A3Q7GUB5_SOLLC; Uncharacterized protein
STRINGSolyc06g035700.1.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-44ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]