PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g048380.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20038.6 Da    PI: 4.9038
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g048380.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.85.7e-13955147
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                        k ie+ + rq  +sk +  i KK +EL  LCd+++a++++s++g++ 
  Solyc06g048380.1.1  9 KIIEDPISRQQFYSKCKDSIVKKSNELGLLCDTNIALLMVSPNGEVT 55
                        5699****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-13160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.871161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-16373IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-11323IPR002100Transcription factor, MADS-box
CDDcd001201.33E-13354No hitNo description
PfamPF003191.8E-131155IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDRNKIMIKI IEDPISRQQF YSKCKDSIVK KSNELGLLCD TNIALLMVSP NGEVTSCSGG  60
ESFEDIMSNA MNQFDELNRH SYEPQAENIN TVEEADAYEQ YLLGAIGRIQ LSKAKFLDNQ  120
EFLKRNENVA EPVRDGRPER NILDHNGCSC SRNYVILVYI LKLSTMNNLH QASKQD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g048380.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2433589e-07Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-30f7 map 1, complete sequence
GenBankAC2467549e-07Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-59a11 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078433.13e-79agamous-like MADS-box protein AGL66
TrEMBLA0A3Q7GS715e-71A0A3Q7GS71_SOLLC; Uncharacterized protein
STRINGSolyc06g048380.1.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-13AGAMOUS-like 66
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]