PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g048870.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 244aa    MW: 26854.2 Da    PI: 6.621
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g048870.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.74.2e-2246101258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                         +Dgy+WrKYGqKe+ gs+fpr    Ct++   +Cp+kk+v+r ++dp v+e+tY+++H++
  Solyc06g048870.1.1  46 EDGYTWRKYGQKEILGSRFPR----CTHQklyHCPAKKQVQRLDNDPYVFEVTYRSQHTC 101
                         7*******************6....99998999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-2144102IPR003657WRKY domain
SuperFamilySSF1182901.31E-1944103IPR003657WRKY domain
SMARTSM007743.5E-2945103IPR003657WRKY domain
PROSITE profilePS5081115.2164699IPR003657WRKY domain
PfamPF031061.5E-1946101IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MFCSDDILIA VSFAHFFSFV CRTGDRDRRT LRVGAPRMGN LELPPEDGYT WRKYGQKEIL  60
GSRFPRCTHQ KLYHCPAKKQ VQRLDNDPYV FEVTYRSQHT CYMSATAPTV PPPSAEEMTH  120
KTTTTLPPAP LLLPPPTSAS LSGHWLSMDI KPQGDQAGTS YTTTPFDIQR DFGHGSVGSL  180
ASLVTAGVGD VGPSGGRYGR EIDYQPVVDM ADAMFNSGSS SNTSMDKIFS SIDDKWDTAE  240
KKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-1546101968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g048870.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145284e-62S.lycopersicum DNA sequence from clone LE_HBa-27B24 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241091.11e-150WRKY transcription factor 55
TrEMBLM1AGZ71e-142M1AGZ7_SOLTU; Uncharacterized protein
STRINGSolyc06g048870.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-36WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]