PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g050950.2.1
Common NameLOC104647955
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 172aa    MW: 19129.8 Da    PI: 5.1713
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g050950.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.42.6e-4371061100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +Ca+Ck+lrr+CakdC+++pyfp ++p+kfa+vhk+FGasn++k+l+++p +er da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+
  Solyc06g050950.2.1   7 PCASCKLLRRRCAKDCIFSPYFPCDDPHKFAIVHKVFGASNISKMLQEVPVNERADAVSSLVYEANARMRDPVYGCVGAISYLQNQVMQLQ 97 
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                          +la++++e
  Solyc06g050950.2.1  98 MQLAMAQAE 106
                         ****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.3796107IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-437104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGAGNSPCAS CKLLRRRCAK DCIFSPYFPC DDPHKFAIVH KVFGASNISK MLQEVPVNER  60
ADAVSSLVYE ANARMRDPVY GCVGAISYLQ NQVMQLQMQL AMAQAEILCI QMQSETPQVE  120
AATVLPITPD NQLVENDHDI DKSFFLSDQY LNFDSTSHKS CNSQDGLFLW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4521087112LOB family transfactor Ramosa2.1
5ly0_B2e-4521087112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g050950.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322163.11e-127LOB domain-containing protein 12-like
SwissprotQ8LBW37e-71LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A3Q7GVM81e-125A0A3Q7GVM8_SOLLC; Uncharacterized protein
STRINGSolyc06g050950.2.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-60LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]