PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g051260.2.1

Common Name

LOC101248685

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 226aa MW: 25553.3 Da PI: 8.92

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g051260.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48	2.3e-15	52	99	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h+e+E+rRRdriN +++Lr+l+P++ +K++Ka L+ +ve++k+L+ Solyc06g051260.2.1 52 RSHSEAEKRRRDRINAQLSTLRKLIPTS-----EKMDKAGLLRSVVEHVKDLE 99 78***********************9.....8**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.59	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-13	52	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.6E-16	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.13E-14	52	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.15E-10	52	99	No hit	No description
SMART	SM00353	1.4E-13	55	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	4.53E-5	136	172	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MLRSIQLREM MDDSSCSKYT HETLSSWCHN LQELPLIPTN SCCWSQQFSA SRSHSEAEKR 60 RRDRINAQLS TLRKLIPTSE KMDKAGLLRS VVEHVKDLEG KAKEMSNVLN TPSDIDEVVI 120 EEEDESSNNN NIVVKVSFSC DDRPELFSEL NRGLKNLKLT TMEAKITSLG GRIKCILSLQ 180 SINVVCTTHS IKHSLRLLLA RIATSPSTSN FRIKSKRQRF FLLAT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	213	218	KSKRQR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.25144	0.0	callus\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g051260.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC158310	1e-110	Solanum lycopersicum AFLP fragment TGT3, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240923.1	1e-164	transcription factor bHLH51
TrEMBL	A0A3Q7GVN0	1e-156	A0A3Q7GVN0_SOLLC; Uncharacterized protein
STRING	Solyc06g051260.2.1	1e-164	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5820	22	35
Representative plant	OGRP377	15	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc06g051260.2.1
Entrez Gene	101248685

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]