PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g053960.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 143aa    MW: 16643.7 Da    PI: 9.9024
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g053960.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35331252103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye+++d+++++++sws+  nsf+v+d++++a + Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk+
  Solyc06g053960.2.1  33 FLTKTYELVDDPSNNDVVSWSRGYNSFIVWDPQNLAINFLPRYFKHNNFSSFVRQLNTYGFRKVNPDH---------WEFANEGFLRGKKH 114
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k +
  Solyc06g053960.2.1 115 LLRTIRRRKPS 125
                         ********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.52E-3528122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5429122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.2E-3729122IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-193356IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3033122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MDHFGNLIKE EFDGSFLTPQ PKECLHENGP PPFLTKTYEL VDDPSNNDVV SWSRGYNSFI  60
VWDPQNLAIN FLPRYFKHNN FSSFVRQLNT YGFRKVNPDH WEFANEGFLR GKKHLLRTIR  120
RRKPSNFIKS SSSINNQASK GY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-243112518123Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.197330.0callus| flower| fruit| stem| trichome
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g053960.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0115517e-07Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0087H10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241039.12e-99heat stress transcription factor A-6b
SwissprotQ9LUH82e-57HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A3Q7GU151e-101A0A3Q7GU15_SOLLC; Uncharacterized protein
STRINGSolyc06g053960.2.11e-102(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-58heat shock transcription factor A6B
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]