PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g054680.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 181aa    MW: 21152.8 Da    PI: 7.1869
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g054680.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.63.6e-091563149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        k+ienk     +f+kRr+g+ KK + L +  ++++ ++++s tgk + +
  Solyc06g054680.1.1 15 KKIENKDSMFASFTKRREGLYKKSSKLATEYNVDIGIMMISATGKPHSF 63
                        68******************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-11766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.563767IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-18879IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-8929IPR002100Transcription factor, MADS-box
PfamPF003195.5E-141663IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MERKKTKGRQ KIPMKKIENK DSMFASFTKR REGLYKKSSK LATEYNVDIG IMMISATGKP  60
HSFFHPTFDA VISRFQNHDM QFGERTNLEA NDARNEVNQL KTRLEELDVR EDIAIAKKNS  120
YEQMEETRQK GWWESTEQLN ADEVFIFETW LNETSSNLHH RLNQLEIEAS SSMRHESFGV  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g054680.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241160.21e-132agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7GUD71e-131A0A3Q7GUD7_SOLLC; Uncharacterized protein
STRINGSolyc06g054680.1.11e-132(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-20AGAMOUS-like 62
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]