PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g063380.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 498aa    MW: 56986.6 Da    PI: 4.3073
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g063380.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.79.4e-1961383127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeek.ew.yfFskrdkkyatgkrknr..atksgy 82 
                          G+rFhPtd+el+  yL + +++++l  + +i+e+d+y+ +Pw           + + +++ +  yf s+r+kk+ +  r +r  a   g+
  Solyc06g063380.1.1   6 EGYRFHPTDSELL-TYLLRFITENNLCDNGFITECDVYNQQPWITYGygrhcggQ-DDGDTnNFrYFISPRHKKSDN--RFSRhvANGLGT 92 
                         69***********.88999999999777799************986346655432.223332335888888888765..666632555789 PP

                 NAM  83 Wkatgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyr 127
                         Wk+  k k + sk+++   +glkk+L +   +   ++  +W+m+ey 
  Solyc06g063380.1.1  93 WKQRDKGKWIRSKQSKPlnMGLKKSLDYD-TNICCPHDGKWLMKEYV 138
                         ************86655569*******97.66677789********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.4584163IPR003441NAC domain
PfamPF023655.7E-156138IPR003441NAC domain
SuperFamilySSF1019415.89E-207163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MEFEEEGYRF HPTDSELLTY LLRFITENNL CDNGFITECD VYNQQPWITY GYGRHCGGQD  60
DGDTNNFRYF ISPRHKKSDN RFSRHVANGL GTWKQRDKGK WIRSKQSKPL NMGLKKSLDY  120
DTNICCPHDG KWLMKEYVFC EAILKKFKNS NYKDYCICAI KRKNSSNPSP SSNASTTDLN  180
EHKLDTEVIS GINSVEPRMD QAITPINIVE PVLRIQESLS DEEKINALLI EYNIDPELTK  240
MRNEDYGMIN HPINVVENPA MEAEVQGNGV SEFENTIPEN NLPVHQQQGF IVDVNEDCNA  300
YSEFQANNSS FVGLLTGYGD YAIRNNWELN TFSPIQEPMI PDFANVKSNI TMPEIYGTLT  360
EYMDADVLMN PENAFDFSKQ SIVESNQVQI TQEAAAGEAN RLLGQTAPFF QIQEFVMPEM  420
FDMGYTLLET QQEPKPQEEC KTLCETEKSS FLDDLTEALL DDVPLNDRLN INRESKITLL  480
LDQQSWESNA HLQDMLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g063380.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025887134.10.0NAC domain containing protein 52-like
TrEMBLA0A3Q7GYD70.0A0A3Q7GYD7_SOLLC; Uncharacterized protein
STRINGSolyc06g063380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1427357
Representative plantOGRP5881218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-13NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]