PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g064540.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 149aa MW: 16955.5 Da PI: 8.5937

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g064540.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.6	5e-39	13	113	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk lrr+C++dC++ pyfp ++p++f +vh+++Gasnv kll++++e++r d+++sl+yeA +r++ PvyG+vg+i+ l+q++++l+ Solyc06g064540.1.1 13 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSFVHRIYGASNVGKLLQQVQEHQRADVADSLYYEAYCRIKSPVYGCVGIITILHQEIDRLE 103 6**************************************************************************************** PP DUF260 92 aelallkeel 101 el+++++e+ Solyc06g064540.1.1 104 RELVKVQAEI 113 ***99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.406	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-38	13	110	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MVDLQNVLMN SRRCAACKQL RRRCPSDCIF LPYFPPNNPQ RFSFVHRIYG ASNVGKLLQQ 60 VQEHQRADVA DSLYYEAYCR IKSPVYGCVG IITILHQEID RLERELVKVQ AEISLVKGQT 120 QIEGQLAQGQ QVQLSSSSFH LPTTTPWF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-37	14	113	12	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-37	14	113	12	111	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00381	DAP	Transfer from AT3G26620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g064540.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027773287.1	7e-99	LOB domain-containing protein 24-like
Swissprot	P59467	7e-47	LBD23_ARATH; LOB domain-containing protein 23
Swissprot	P59468	5e-47	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A3Q7HRS9	1e-100	A0A3Q7HRS9_SOLLC; Uncharacterized protein
STRING	Solyc06g064540.1.1	1e-107	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-49	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Solyc06g064540.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]