PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g065040.2.1
Common NameLOC101256189
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 255aa    MW: 27880.1 Da    PI: 6.7891
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g065040.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-13189234655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Solyc06g065040.2.1 189 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 234
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16186244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.17E-13187238No hitNo description
Gene3DG3DSA:4.10.280.101.0E-16188246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10189234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-13189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MQRGTTGDGG GGLSRFRSAP ATWLEALLES DTESEVILNP SSPILHTPNK PPPHPSTPKL  60
KLETGGATRF TGDPGLFESG GSSNFLRQNS SPAEFLSHIS SDGYFSNYGI PSSLDYLSPS  120
VDVSQSAKRT RDDDSESSPR KLVSQLKGES SGQLHGSGGS LDAEMENLMD DLVPCKVRAK  180
RGCATHPRSI AERVRRTRIS DRIRKLQELV PNMDKQTNTA DMLEEAVEYV KFLQRQIQEL  240
TEHQKKCTCS MKDQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.68710.0flower| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g065040.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315191.10.0transcription factor bHLH81-like
SwissprotQ9C8P81e-73BH080_ARATH; Transcription factor bHLH80
TrEMBLM1D3H51e-173M1D3H5_SOLTU; Uncharacterized protein
STRINGSolyc06g065040.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-60bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]