PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g065190.1.1

Common Name

TCP13

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 326aa MW: 34718.2 Da PI: 7.9123

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g065190.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.7	1.2e-39	36	162	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++ ++s +ss+ + s++ Solyc06g065190.1.1 36 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksap 126 899***************************************************************9998777777777744444555556 PP TCP 89 ...................................k 89 + Solyc06g065190.1.1 127 lfihggaatmlgfhhqipgnsfgqdpdenfmkkryR 162 666666666666666666666654333322222220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.3E-38	39	181	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.652	39	93	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MEFRESNSKN NQDGGSNSNN NSNENNSNVI STKIVKKPSK DRHTKVDGRG RRIRMPALCA 60 ARVFQLTKEL GHKSDGETIE WLLQQAEPSI IAATGTGTIP ANFSTLNVSL RSSGTTISAP 120 PSKSAPLFIH GGAATMLGFH HQIPGNSFGQ DPDENFMKKR YREDTTAAST SPSSSSAKPE 180 RTGVQGHEPD QESKPGSSNP SSYIPTPAMW AVGPAAGNVG NTFWMLPGTS STMQRIGGFE 240 LPGGGRFSPV QLGSMFLQQP QPVQQLGLGV TETNMGMLAS MNAYNSSSSR GSGIDLGMNL 300 EQHHHHQNQP QGSDSGDENH KDSQS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.6974	0.0	floral bud\| leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g065190.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209513	0.0	Solanum lycopersicum chromosome 6 clone C06HBa0286N17, complete sequence
GenBank	AC211087	0.0	Solanum lycopersicum chromosome 6 clone C06SLm0132E21, complete sequence
GenBank	GQ496331	0.0	Solanum lycopersicum TCP transcription factor 13 (TCP13) mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001233966.1	0.0	TCP transcription factor 13
Swissprot	Q9C518	4e-66	TCP8_ARATH; Transcription factor TCP8
TrEMBL	G3BGV3	0.0	G3BGV3_SOLLC; TCP transcription factor 13
STRING	Solyc06g065190.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201
Representative plant	OGRP4591	10	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	2e-59	TCP family protein

Link Out ? help Back to Top
Phytozome	Solyc06g065190.1.1
Entrez Gene	100736549

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Parapunova V, et al. Identification, cloning and characterization of the tomato TCP transcription factor family. BMC Plant Biol., 2014. 14: p. 157 [PMID:24903607] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]