PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g068390.1.1

Common Name

LOC101258965

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 178aa MW: 20275.8 Da PI: 8.936

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g068390.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Solyc06g068390.1.1 56 FSCNYCYRNFYSSQALGGHQNAH 78 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.93E-6	52	84	No hit	No description
PROSITE profile	PS50157	11.198	56	83	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MDSQNQSAQD DKQENNGLIL DLDLSLLCNW ELKPTDDQII KTTNHTCDGE TEHQVFSCNY 60 CYRNFYSSQA LGGHQNAHKR ERTTMAKRKH SMDSIPIMHR PPPAIQAHSM THKPNISSNT 120 FRAPAIPTSL YNTHSAPMWS KRRRDQFPVI GRPERNKFST VVGSQEDLKK LDLSLKL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.661	0.0	cell culture\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g068390.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004241683.1	1e-133	zinc finger protein 3
TrEMBL	A0A3Q7GWW5	1e-132	A0A3Q7GWW5_SOLLC; Uncharacterized protein
STRING	Solyc06g068390.1.1	1e-132	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15930	6	6
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	4e-20	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Solyc06g068390.1.1
Entrez Gene	101258965

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]