PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g069560.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 416aa    MW: 46333.7 Da    PI: 4.2625
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g069560.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.5e-07142189347
                         SS-HHHHHHHHHHH....HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdav....kqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +W++eE+el+ ++v    + lG++ W+  a +++  R+  +++s+++++
  Solyc06g069560.1.1 142 KWSEEEEELFHEVVfsnpAALGKNFWDHLAVEFP-SRSKRDLVSYYFNV 189
                         8*************4444456666**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-4138201IPR009057Homeodomain-like
SMARTSM007173.2E-4139192IPR001005SANT/Myb domain
CDDcd001670.00452142190No hitNo description
PROSITE profilePS500906.051142190IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEVYSPLFNN PPRKSVPIGP DFQAELPEWG AYDSKNISVK ESTQESSNLP SQALESDFVD  60
HHDEENKLAG TCIIPMPKLE SPADHEENVG AGRIGCSCGD AGSFGCVRLH IMEAREKLKA  120
ALGEETFVRL GVYDMGEIVA EKWSEEEEEL FHEVVFSNPA ALGKNFWDHL AVEFPSRSKR  180
DLVSYYFNVF ILRKRAKQNR FDPSNIDSDN DEWQEIDDDV VATGAQMTDD DEDSVVESPI  240
YQNYPGHNEI YVTEKQAYDE EAGVATLEDY QTINFCRRKV LSDVSKACPD ELIDNNSSCG  300
HNIQPLDRHH SNEVGNHDVE DNSCTTDAAG ASSDTPQVKT DDCKHWASHF AGVGIDSGHD  360
FVMEPSNGKE WDMGGYLSCP KNEVDLLPTC SMIEEVFGDE AWSSKHRDGH SLSKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191197LRKRAKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.149050.0callus| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g069560.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2192230.0Solanum lycopersicum chromosome 6 clone C06SLm0062L07, complete sequence
GenBankAC2260160.0Solanum lycopersicum chromosome 6 clone C06SLm0065P01, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241596.10.0uncharacterized protein LOC101258762
TrEMBLM1D6M80.0M1D6M8_SOLTU; Uncharacterized protein
STRINGSolyc06g069560.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15141625
Representative plantOGRP294745
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]