PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g069600.1.1
Common NameLOC101260653
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 415aa    MW: 46583.5 Da    PI: 9.3481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g069600.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.7e-16200247355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + hn+ ErrRRdriN+++  L++l+P+a      K +Ka++Le++++Y+k+Lq
  Solyc06g069600.1.1 200 AVHNQSERRRRDRINEKMKALQKLVPNA-----SKTNKASMLEEVIKYLKQLQ 247
                         57*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.3E-18194267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.08E-17194251No hitNo description
SuperFamilySSF474591.44E-18194266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.962197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-14200247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-16203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSHHTWNFSH QKQEQQVVEK EEEENRYTRG HVHNQQNQVD PMSNKCEVAE LTWENGQVAM  60
HRLGSNLSNE QTKHTWGKAG DTLESIVHQA TFQKQHHSYI MGSDGQNQAN INREKNVSYG  120
AQQTRGVLKR MRSSDSDPQL YIGGISLEHL NARASAKDND ITMITWPCNE DSACHGGSEN  180
KEEERETKSS NPSKRSRRAA VHNQSERRRR DRINEKMKAL QKLVPNASKT NKASMLEEVI  240
KYLKQLQAQI QLISYAKNME QQMMMMSLGM QPAHIQMPLL ATMGMCSSTT GILNNMTSNL  300
APAPYQSLIG GRAPLIYPTS SMPTLFPPFM SPPFATASSI PSTPPQPINA ESISPKLTKY  360
AAPPNIAAST SFPFSHPYNA YLPHSMKMEF NNEMAAQYLQ RGNQENVNIQ GQKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197209RAAVHNQSERRRR
2205210ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g069600.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260160.0Solanum lycopersicum chromosome 6 clone C06SLm0065P01, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242180.10.0transcription factor UNE10-like
TrEMBLA0A3Q7H0Y50.0A0A3Q7H0Y5_SOLLC; Uncharacterized protein
STRINGSolyc06g069600.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-39bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]