PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g071300.1.1
Common NameLES1_20t00013
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 131aa    MW: 15009.1 Da    PI: 5.1386
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g071300.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.71.8e-14754350
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        i+  +n+  ++  R++ i  K  EL +LCd++v+ +i +++g+l++++
  Solyc06g071300.1.1  7 IKRRTNNPKSYQVRKECIKRKSMELATLCDIKVCTVITGPNGELQTWP 54
                        8889999****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.652157IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-15681IPR002100Transcription factor, MADS-box
PfamPF003194.1E-10753IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MAEEDEIKRR TNNPKSYQVR KECIKRKSME LATLCDIKVC TVITGPNGEL QTWPDDFDAC  60
KQVLDLYSQN LKPEKKYKES STPEPEPEPE PERGEEQGEK DLLTLVESTL AAVNRRICIL  120
ENKGKRKRIE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g071300.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1600950.0Solanum lycopersicum clone BB, complete sequence
GenBankAC2095110.0Solanum lycopersicum chromosome 6 clone C06HBa0153G23, complete sequence
GenBankAY7961140.0Lycopersicon esculentum clone Le_HBa 153G23 putative transposase, putative BAH domain-containing protein, putative permease I, putative pollen specific LIM domain-containing protein, putative betaine aldehyde dehyrogenase, EDS1, and putative ribosomal-protein S6 kinase-like protein genes, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019069881.12e-90agamous-like MADS-box protein AGL103
TrEMBLQ53J205e-89Q53J20_SOLLC; SRF-type transcription factor family protein
STRINGSolyc06g071300.1.19e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Representative plantOGRP1580123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39810.18e-11AGAMOUS-like 98
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]