PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g071660.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 204aa    MW: 22772.6 Da    PI: 6.8975
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g071660.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.83.9e-4341139199
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrrkC ++C++ap+fp e+p+kfanvhk+FGasnv+kll+++ +++reda+++l+yeAear+rdPvyG+v+ i+ lq+q+e+l+
  Solyc06g071660.1.1  41 PCAACKFLRRKCLPGCIFAPHFPPEEPHKFANVHKIFGASNVTKLLNEVLPHQREDAVNTLAYEAEARVRDPVYGCVSAITFLQRQVERLE 131
                         7****************************************************************************************** PP

              DUF260  92 aelallke 99 
                         +el+++k+
  Solyc06g071660.1.1 132 KELDSAKA 139
                         ***99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.0440141IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-4241138IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGETSFSSLQ LGFFPFELAS IHQYQYYLYI YMASSSCYNS PCAACKFLRR KCLPGCIFAP  60
HFPPEEPHKF ANVHKIFGAS NVTKLLNEVL PHQREDAVNT LAYEAEARVR DPVYGCVSAI  120
TFLQRQVERL EKELDSAKAD LMRYASNDMS QPLIGTHHHE GENIGSTLHN MAMSRRMGYD  180
HHGGGSYFPW NDQNNSGGGG GNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-624014910119LOB family transfactor Ramosa2.1
5ly0_B1e-624014910119LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269|PubMed:12068116}.
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g071660.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322541.11e-129protein LATERAL ORGAN BOUNDARIES-like
SwissprotQ9FML48e-69LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A3Q7HUK21e-127A0A3Q7HUK2_SOLLC; Uncharacterized protein
STRINGSolyc06g071660.1.11e-153(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.49e-71LBD family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]